DNA Ink

We’ve been pretty serious for a while, which always makes me a little edgy. And “tattoos” or some version thereof continues to be one of the biggest search terms for this blog. So, to raise the font size of “tattoos” in the tag cloud, I’ve put together a gallery of eye candy.

In their 1994 book, The DNA Mystique, Susan Lindee and Dorothy Nelkin write that “habitual images and familiar metaphors…provide the cultural forms that make ideas communicable.” The double helix is the scientific icon of our age—much like the Bohr atom was during the Cold War. Putting it on your body identifies you with science, with biotechnology, with life. It is also just a stone beautiful image, which works in a line, say down your spine, wrapped around a biceps or ankle, or curving sinuously just about anywhere. The best collection of science-themed tattoos of course is Carl Zimmer’s “Science Tattoo Emporium.” Many of these were borrowed from his archive, so a big hat-tip (tat-hip?) to him. I have the hardcover version Science Ink prominently displayed on my coffee table. Others drawn from elsewhere around the web. Click the picture to open the original url.

tree-dna
A DNA riff on the Darwinian image of the “tree of life.” But it of course also reminds me of the eugenics tree…

eugenics-tree

Foot tattoos are hard. Here's a cute rendition of unwinding DNA that flows nicely with the anatomy.
Foot tattoos are hard. Here’s a cute rendition of unwinding DNA that flows nicely with the anatomy.
Not the best execution of the image (no major and minor grooves), but a neat black-light effect that reminds me of fluorescent labeling.
Not the best execution of the image (no major and minor grooves), but a neat black-light effect that reminds me of fluorescent labeling.
Just. Wow.
Just. Wow.
All right, I admit I'm wondering whether this represents bacterial DNA (and is therefore circular).
All right, I admit I’m wondering whether this represents bacterial DNA (and is therefore circular).
An interesting “biomechanical” visual effect.
Here artist Jason Stomber has woven the double helix into a full sleeve.
Here artist Jason Stomber has woven the double helix into a full sleeve.
Clever use of the DNA icon by a pair of twin sisters. Of course, when they line them up, they become prokaryotes.
Clever use of the DNA icon by a pair of twin sisters. Of course, when they line them up, they become prokaryotes.

 

 

Stop saying “biologically programmed,” goddamit!

Here’s your quick daily dose of biological determinism. This is nice because it combines deterministic thinking about both genes and brains. If this article were a bird it would be a Great Blue Heron–not exactly rare, but impressive nonetheless. I’m going to pick on it, largely because I slept like crap last night and I’m feeling cranky.

US News and World Report asks, “Could a gene help make you obese?” Okay, that right there is either shocking (You mean it’s not just eating too much?) or trivial (No shit. Genes could and indeed do help in making me everything I am).

People who carry two copies of a variant form of the “FTO” gene are more likely to feel hungry soon after eating a meal, because they carry higher levels of the hunger-producing hormone ghrelin in their bloodstream, an international team of scientists found.

Holy crap! There’s a hunger-producing hormone? Bip! Bip! Bip! “Hello, World Health Organization? Yea, look, this is gonna sound crazy, but we can END WORLD HUNGER TOMORROW! Seriously! All we need is four tanker-freighters of anti-ghrelin…”

What’s more, brain scans revealed this double FTO gene variant changes the way in which the brain reacts to food and ghrelin.

Oh god, where’s the Alka-Seltzer? I knew I shouldn’t have had that third plate of deep-fried ghrelin poppers before the game last night. Probably why I slept so crappy…

And now we come to the neuro-determinism part of the post.

People with the double variant displayed different neural responses in the brain region known to regulate appetite and the pleasure/reward center that normally responds to alcohol and recreational drug use.

I don’t have a problem with referencing the nucleus accumbens, the so-called “pleasure center.” That research is decades old. But the phrasing here subtly and repeatedly encourages the crass phrenological misperception that the brain is just a bunch of lumps each dedicated to some 21st century activity, like chugging Jaegermeister, snorting Adderall, and swallowing whole Twinkies. It’s not, people. The genome doesn’t work like that and the brain doesn’t work like that. It seems that way, because we study them by trying to figure out how brains and genes influence stuff we already do. When you look from the bottom up at how they work to produce signals, it turns out to be much more complex and subtle.

“Oh, but Genotopia,” the journalist complains. “I can’t go on about the nucleus accumbens! I know it’s a simplification, but these little short-cuts are necessary in order to write about complex science for wide audiences!”

Okay, whiner, I’ll do it for you. Ta-da:

People with the double variant displayed greater activity in two key brain regions, one involved in creating the sensation of hunger, the other linked to feelings of pleasure.

You see? Easy. A couple of little tweaks and you introduce hints of contingency and inter-connectedness, rather than implying that we’re all made out of Legos. No waffling, and no Latin.

Just so the poor writer doesn’t feel singled out, the scientists do it too. The lead author on the study says,

 “What this study shows us is that individuals with two copies of the obesity-risk FTO variant are biologically programmed to eat more.”

Really? You’re going to go with “biologically programmed”? I thought we got rid of that language just after Jurassic Park. People homozygous for this one variant may well show a statistical correlation with obesity. It may even be legitimate to say they have a predisposition to eat more. But for Mendel’s sake, ban the cyborg-speak, will you?

Okay, I have to get to work, so I’m not going to go through this entire article. But look, this is an increasingly important issue. We are constantly being told how we have to take our healthcare into our own hands. Education is crucial. And the single most important concept in dealing with the really complex systems of the body–the genome, the brain, the immune system–is probability. By 2013, deterministic speech like this is just laziness. Good science writers and careful scientists don’t say this stuff any more. Doing so is a real disservice to a public that is increasingly dependent on translations of science for its understanding of biology and health. Trash those old metaphors, adopt a few new clichés and stock phrases, and we will be a long way toward a healthier understanding of our own bodies.

News of genes for: the latest examples—and further reflections on why we persist in believing in them

There is a basic contradiction in the lay response to genome news. Somehow, the more we learn about how complex and nuanced gene action is, the more we seem drawn to “gene-for” explanations. Collectively, we know that genes do not directly determine or control traits, let alone behaviors. And we know that single genes do not produce complex traits, except (maybe) in a few extreme and rare circumstances. There are no genes for; and yet we keep talking about them—possibly more than ever. Why is that?

Individual cases, drawn from current events, both demonstrate my premise and give us some leverage for prying apart the halves of this paradox.

So let’s roll up our sleeves and get started.

 

I stink, therefore I scam

One of the less appetizing findings of genetics is that if you can’t roll your earwax up into a nice, satisfying ball, your gym buddies in all likelihood choose lockers disconcertingly far from yours. The gene ABCC11 codes for a protein that is involved in the consistency of earwax—and that is apparently quite nutritious to the bacteria that produce body odor. There is, in short, a “key gene” that is “basically the single determinant of whether you produce underarm odor or not,” said Ian Day, a co-author of a new study on the behavior genetics of raunchy pits.

All this has been known for some time. A new paper, by Day and colleagues and published in the Journal of Investigative Dermatology, found that many people who lack “the underarm odor gene” nevertheless still wear deodorant.

One the one hand, this shows that genetics often makes very little difference in our lives. I haven’t confirmed the result with my own nose, but accepting for the moment that ABCC11 does in fact code a protein largely responsible for body odor, apparently few people are paying much attention to it. More important than whether we are actually olfactorily offensive, seemingly, is the marketing ploy that presents human beings as innately stinky creatures, who, in order to be socially successful, need to neutralize our natural stench with perfumes and deodorants. We deodorize independently of the presence of body odor.

On the other hand, then, although we are not slaves to our genes, this study suggests that we are slaves to our culture. Cultural norms and values often shape our behavior more than biological “reality.”

Nor surprisingly, the allele frequency for dry earwax/odorless axilla (the anatomical term for armpit; the middle-schoolers in your life will be thrilled to know this term) varies geographically: 98% of people of European ancestry are wet and stinky, while essentially all Koreans and most Asians generally are dry and odorless. In a nice double-header of genetic determinism plus medical Eurocentrism, Medical News Today bowdlerized the story as, “Two percent of people have armpits that never smell.” Of course, other things besides ABCC11 can make you smell bad. Given sufficient antipathy to bathing and/or doing laundry, anyone’s armpits (and everything else) will begin to reek. And it takes a remarkably blinkered perspective these days to report this result as two percent of people—to neglect the roughly 4/7 of the world population that is Asian. The whole thing makes me break out in a cold sweat.

 

Anthill Anarchy

Two more papers made claims that were more than skin-deep. A paper in Nature, not on humans but on fire ants, suggests the existence of a “social chromosome.”  A string of 616 genes was identified that correlates with the type of social system an individual ant will accept: either a single-queen system or a multi-queen system.

If all the workers in a colony carry the B variant only, they will accept a single queen that also carries only the B variant (marked as BB, because the chromosomes come in pairs). But if some workers in the colony carry the b version of the chromosome, the colony will accept multiple queens — but only those queens with a mismatched “Bb” set of chromosomes. From the Roman Empire to Occupy Wall St., with the flip of a switch.

In the 1960s, during the first flowering of human cytogenetics, the finding that a disproportionate number of inmates in a British hospital for the violently insane carried an extra Y chromosome led to the idea of the “criminal chromosome.” So-called XYY males were branded as potential criminals. These unfortunates, it was speculated, were predisposed to violent crime as a result of having an extra dose of maleness, with its attendant propensities toward aggression and lack of empathy. Several serial killers were labeled as XYY (incorrectly, in most cases) and the “my genes made me do it” defense was attempted in court, though never successfully. The XYY controversy made headlines through the late 1960s and early 1970s, particularly when the science-activism group Science for the People got hold of a Harvard study intended to interrogate this and other claims about the effect of extra sex chromosomes on behavior. The controversy died when the research arm of the Harvard study was suspended. Thus ended this particularly primitive version of the fantasy of preventing violent crime by identifying it before it starts by aborting affected fetuses (bg essay). More sophisticated versions would involve large complexes of genes and subtler therapies; medication, say, and counseling, perhaps lifelong.[1]

The implications of the ant study also lie in the area of behavior control, though the present work limits its conclusions to entomology. “Our discovery could help in developing novel pest-control strategies,” said paper co-author Yannick Wurm (I know, I know) of the University of London. For example, a pesticide could artificially deactivate the genes in the social chromosome and induce social anarchy within the colony.” What could possibly go wrong?

 

Gene for humanity

Another new study identified microRNAs–short strings of nucleic acid that regulate gene expression–that are found in human brains and (so far) only in human brains. The blog Why Evolution is True delivers a sober account of the finding: “We have a human-specific molecule, miR-941, that regulates gene expression in our brains, and some of the genes it might have regulated have dropped out of the pathway.”

This modest but interesting finding has been overblown in the media to a “gene for humanity,” says whyevolutionistrue. The term “holy grail” really should be used only in conjunction with killer bunnies but the phrase’s mytho-comic connotations are apt here, I think. How thrilling (and frightening) to think there might be a single gene that holds the key to separating us from the apes! Could a single wayward x-ray to the groin lead to a Cro Magnon blessed arrival, fruit of the loins of a middle-class mom from Dubuque? Could we, by means of genetic engineering and maternal surrogacy, resurrect an extinct humanoid species such as, say, a Neandertal?

 

Search for the root causes of the search for root causes

As always, there are two distinct but connected forces at play in these stories. Gene-for hype occurs on at least two levels. First is the scientific fascination with seeking the hereditary component of anything. The laudable emphasis today on multi-gene complexes and gene-environment interaction has done little to dampen our enthusiasm for seeking the genetic “roots” or “basis” of natural behaviors. The reasons for this are complex, but at least part of the explanation is inherent in the science. Quite simply, environmental influences are hard to analyze using existing scientific methods. So the cutting edge of behavioral research brackets the environment and asks questions that are answerable (and of course fundable). This de facto determinism is built into the style of scientific practice: what counts as interesting is shaped by what is convenient to study.

Second, as scientific results filter outward from the lab to the media outlets and blogs to the public eyeball, the natural and necessary distillation of complex, nuanced findings into plain, sixth-grade-level language easily becomes perverted. How many hits would you get by writing, “Genes regulated by human-specific molecule may have dropped out of cascade pathway thousands of generations ago”? Perhaps the more relevant human-specific trait here is the desire for simple explanations and sensational stories about root causes and “the key” to whatever.

It is tempting to write that this impulse for ultimate causation explains everything about genetic determinism. But that would create more problems than it solves.


[1] Court Brown, W. M. “Sex Chromosomes and the Law.” The Lancet 280, no. 7254 (1962 1962): 508-09; Maclean, N., J. M. Mitchell, D. G. Harnden, Jane Williams, Patricia A. Jacobs, Karin A. Buckton, A. G. Baikie, et al. “A Survey of Sex-Chromosome Abnormalities among 4514 Mental Defectives.” The Lancet 279, no. 7224 (1962 1962): 293-96; Jacobs, Patricia A., M. Brunton, M. M. Melville, R. P. Brittain, and W. F. McClemont. “Aggressive Behavior, Mental Subnormality and the XYY Male.” Nature 208 (1965 1965): 1351-52. doi:10.1038/2081351a0.

Walzer, S., and P. S. Gerald. “Social Class and Frequency of XYY and XXY.” Science 190, no. 4220 (1975 1975): 1228-9; Steinfels, M. O., and C. Levine. “The XYY Controversy: Researching Violence and Genetics.” Hastings Cent Rep 10, no. 4 (1980 1980): Suppl-1-32.

 

Risks of a genetic approach to crime prevention

I have a piece in the Hartford Courant‘s special set of editorials on the Sandy Hook tragedy. The headline-writer missed the point–I am not asking whether genetics could help in understanding and preventing such violence. Of course it can yield at least a partial explanation. My concern is the risk of any prevention program grounded in that genetic understanding. That way leads us toward pre-emptive medication of a class of “future criminals”–a frightening prospect indeed.

Adam Lanza
Adam Lanza [photo from The Blaze]
Here’s the piece.

The piece was written two weeks ago. Yesterday, Wayne Carver, the Connecticut Medical Examiner who ordered the genetic analysis, called it a “fishing expedition.” He continued, “but that doesn’t mean you don’t look.” Why doesn’t it? Only because you don’t see the risks as being greater than the benefits, however tiny they may be. My argument is that the risks are greater than we realize.

The biology of good and evil

In today’s New York Times, columnist David Brooks writes about the innate capacities for good and evil. Criticizing what he considers the prevailing worldview today, he writes that we believe that nature is fundamentally good, and hence, so we believe, are people. The Hitlers, the Idi Amins of this world are fundamentally warped. “This worldview,” he writes, “gives us an easy conscience, because we don’t have to contemplate the evil in ourselves. But when somebody who seems mostly good does something completely awful”–such as Robert Bales‘s recent massacre of 16 Afghan civilians, including children–“we’re rendered mute or confused.”

Brooks prefers an older view, in which humans are believed to be a mixture of good and evil. Thus, everyone possesses in some measure the capacity for atrocity. We should be concerned and shocked when such actions are committed, but not surprised. So far, I’m with him. I agree about the “easy conscience” that comes with the lack of hard introspection.

But Brooks then makes his argument biological. He cites the University of Texas evolutionary psychologist David Buss in support of his view. Buss studies human behavior such as jealousy, violence, and mating strategies in the context of Darwinism and especially sex differences. He is thus part of a long tradition of psychologists who seek to explain sexual and antisocial behavior in naturalistic terms, stretching back through Edward O. Wilson‘s sociobiology in the 1970s (here is the famous “Chapter 27” from his textbook, which defined the field) and 1980s, to Progressive-era researchers such as the feeblemindedness expert Henry Goddard, the founder of eugenics Francis Galton, and the Italian criminologist Cesare Lombroso. Such work inevitably sparks controversy because it claims that antisocial behavior is innate and therefore genetic.

Genetic determinism is often associated with a conservative and punitive worldview. If violent tendencies are inborn, there is little we can do about them. Those who display them must be locked up, so that the law-abiding can get on with their lives. Genetic determinism tends to ignore the environmental causes of violence, such as poverty and oppression. Historically, it has tended to align with the preference for criminalization over medicalization of antisocial behavior. That, however, may be changing. Perhaps it is possible to “cure” such behavior by tweaking our genes.

In “The Murderer Next Door: Why the Mind is Designed to Kill,” Buss argues that murderous tendencies have been selected for in evolution. By definition, that which can be selected for has not only a basis in our physical bodies, but therefore a basis in our genes. A necessary implication of this view, then, is that there are certain forms of certain genes that predispose us to violence. Buss’s work is the evil twin of works such as Matt Ridley’s The Origins of Virtue. Although the eugenics of the 1910s–1930s is easily mocked for its simplistic biologically determinist analyses of complex behaviors, now we have more complex biologically determinist analyses of complex behaviors. The problems raised by both are essentially the same.

If there are genes for good and evil, then we can find them. Genome-wide association studies are certainly capable of finding correlations between murder and certain passages in our DNA text. I believe they can find correlations between DNA and almost anything. It is only a matter of time before the “genes for” heinous acts such as Bales’s are found.

I believe those genes exist. There is no rational reason to doubt it. The problem is that the finding may well be meaningless. Something like criminal behavior is so complex that it will turn out to be influenced by hundreds if not thousands of genes. Those genes will interact in complex ways, both with each other and with the environment—and those interactions will themselves depend on other genes and other environmental factors. Finding genes associated with violence would be like finding a handful of sand and claiming that a cause of surfing has been discovered. Well yes, but so what?

Historically, finding that violence is “in the genes” has reinforced punitive models of behavior modification. “Innate” has equaled “immutable.” But biomedical research is moving rapidly toward being able to change the genes. In principle, the controlled environment of the laboratory is much more conducive to engineering than the messy world of populations, culture, and economics. Someday, we may wish for a trait to be found to be strongly heritable, for then it will be easy to alter–the way infectious diseases such as tuberculosis, which once were a death sentence, are now in the age of antibiotics easily treatable. In such a world, the ultimate arbiter of social behavior shifts from the justice system to the biomedical system.

Such a biomedical Brave New World would have enormous implications. I don’t see that we have begun to address the consequences of such a shift.

Scientists find gene for love of the sea

What did Thor Heyerdahl, Captain Ahab, and Odysseus have in common? They all may have shared a common variant of a gene for love of the sea.

Researchers at Mystic University in Connecticut have identified a gene associated with seafaringness, according to an article to be published tomorrow in the journal Genetic Determinism Today. Patterns of inheritance of the long-sought gene offers hope for “sailing widows,” and could help explain why the sailing life has tended to run in families and why certain towns and geographical regions tend historically to have disproportionate numbers of sea-going citizens.

The gene is a form of the MAOA-L gene, previously associated with high-risk behavior and thrill-seeking; another form of the gene, found last year, made news as the “warrior gene.” The current variant, dubbed 4C, was found by a genome-wide association study (GWAS) on 290 individuals from Mystic, CT, New Bedford, MA, and Cold Spring Harbor, NY—all traditional nineteenth-century whaling villages. Residents showed the presence of the 4C variant at a frequency more than 20 times above background in neighboring landlocked towns.

C. M. Ishmael, the lead researcher on the study, said the findings could be a boon to medicine. Although the International Whaling Commission outlawed commercial whaling in 1986, the research could benefit literally hundreds of “sailing widows” left alone for Wednesday-evening sailboat races up and down the East Coast. Each year, an average of 11 salt-stained Polo shirts wash up on the New England and Mid-Atlantic coasts, the only remains of lantern-jawed investment bankers and their half-million-dollar boats. Ishmael said he is trying to have the irrational urge to sail entered into the Diagnostic and Statistical Manual, standard reference for psychiatric diseases, in the next, fifth, edition.

“This receptor is an exciting potential target for new drug therapies,” Ishmael said in a phone interview. “We hope lots of companies will be interested in it. And venture capital, too.” Ishmael is himself CEO of a company, MysticGene, formed to develop such therapies. When asked about potential conflict of interest, he replied cryptically, “Well, duh.” Shares of MysticGene closed higher on Monday following the announcement.

The gene for seafaringness has long been an object of study for human geneticists. The trait was first described in 1919 by Charles Davenport, director of Cold Spring Harbor Laboratory, who named it “thalassophilia.” Using pedigree analysis and anecdotal correlation, Davenport identified thalassophilia as a sex-linked recessive gene and distinguished it clinically from wanderlust, or love of adventure. Although one might think naively that people living in towns with good harbors would tend to go to sea, Davenport suggested the reverse: those with the thalassophilia trait have tended to migrate toward regions with good harbors and found settlements there. The current study does nothing to refute Davenport’s analysis.

Further, a tentative expansion of the GWAS analysis to various racial groups largely confirms Davenport’s observations that thalassophilia is more prevalent in Scandinavians and the English, and less common in people of German ancestry.

Thalassophilia joins a rapidly growing list of complex behavioral traits that have been shown to have a genetic basis, thanks to GWAS. Besides the warrior gene, recent studies have found genetic links to promiscuity, aggressive behavior, especially while drinking, religiosity, and bipolar disorder, or manic depression—all traits that Davenport and other early human geneticists were deeply interested in. The difference is that modern science better understands the mechanisms involved.

“Seamen know very well that their cravings for the sea are racial,” Davenport wrote in 1919. “’It is in the blood,’ they say.” Today we know it’s not in the blood—it’s in the genes.

The true bits:

Garland E. Allen, “Is a New Eugenics Afoot?,” Science 294, no. 5540 (October 5, 2001): 59 -61. (http://www.sciencemag.org/content/294/5540/59.short)

Charles Benedict Davenport and Mary Theresa Scudder, Naval officers: their heredity and development (Carnegie Institution of Washington, 1919),http://books.google.com/books?id=EWESAAAAYAAJ&dq=naval%20officers%3A%20their%20heredity%20and%20development&pg=PP1#v=onepage&q&f=false.

Richard Alleyne, “A gene that could explain why the red mist descends,” Telegraph.co.uk,http://www.telegraph.co.uk/science/science-news/8219521/A-gene-that-could-explain-why-the-red-mist-descends.html.

Jeremy Taylor, “Violent-drunk gene discovered,”http://www.asylum.com/2010/12/23/bad-drunk-gene-discovered/.

Justin R. Garcia et al., “Associations between Dopamine D4 Receptor Gene Variation with Both Infidelity and Sexual Promiscuity,” ed. Jan Lauwereyns, PLoS ONE 5, no. 11 (11, 2010): e14162.

C. Frydman et al., “MAOA-L carriers are better at making optimal financial decisions under risk,” Proceedings of the Royal Society B: Biological Sciences (12, 2010),http://www.newscientist.com/article/dn19830-people-with-warrior-gene-better-at-risky-decisions.html.

 

 

%d bloggers like this: